Changes in version 1.0.4 (2025-05-12)                  

Minor update to pass CRAN checks

  - updates citation for retain on CRAN

  - avoids deprecated use of S3 methods

                 Changes in version 1.0.3 (2022-09-12)                  

Minor update to pass CRAN checks

  - removed imports for unused packages

  - removed dependency on deprecated sparse matrices

  - correct links in citations and vignettes

                 Changes in version 1.0.2 (2021-07-30)                  

Updates maintainer contact details.

  - resolves vignette formatting #11

  - passes updated CRAN checks (links updated)

                 Changes in version 1.0.1 (2020-07-17)                  

  - Update citation to reflect acceptance at JOSS

  - Update documentation (package help page, links and cross-references)

  - Critical changes to vignettes to reduce build time (required for
    regular CRAN checks)

                 Changes in version 1.0.0 (2020-07-02)                  

  - Major stable release: note changes to results are possible! (legacy
    code should run without breaking)

  - Expanded documentation and examples (consolidate into fewer
    vignettes for clarity)

  - Resolves errors handling inhibiting edges

  - Efficiently compute a state matrix from a vector of edge properties
    from paths

  - Enables passing "sd" (standard deviation) to alter covariance of
    Sigma matrix

  - Adds methods for computing using Laplacian matrices

  - Adds function to compute simulations directly from an adjacency
    matrix

  - Migrates computing states to sigma (these matrices include
    inhibitions)

                        Changes in version 0.1.1                        

  - Initial CRAN release

  - Unit testing for all functions

  - Checking for compatible inputs

  - Passing layout parameters to plotting function

  - Full vignette of biological pathway

  - Merge plot_directed from function from plot.igraph to avoid github
    dependencies

  - Added example data for reactome pathways

                        Changes in version 0.1.0                        

  - Initial version of the package for generating simulated data